Scaffold Ga0153700_10399

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10399
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21811
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041640	Metagenome	159	Y
F042903	Metagenome	157	Y
F080895	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1039922	F042903	AGGAG	MAKLPYTYTICPDQEAPKSFTASCKDMGELLRHSPNGDLTINQKRTATWDMWSGNHMGHIEEALHEMTKKEKPNDK*
Ga0153700_103994	F080895	GGAG	MTHHTTEYDDDHSSWHSCVLCGDDVHHERYALGYRSCMHCGNQAAISARQSWCVVQPYGKGPYMLVTDASAPQTLLDTNQKYPRS*
Ga0153700_103996	F041640	AGGA	MKTTKIGAPVSYRNCFIVPVNSGFDVVDKTSGRWIHIASQRLAKWNATVWSRLSVEFDTSTPISRQKQAELWLGAVSIDKQPKVKK*