Scaffold Ga0153700_10349

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10349
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24014
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (78.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002653	Metagenome	539	Y
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_103491	F019448	N/A	RRNEMTAMTKTQMVNACADYEVDWFFDREPAEQREVFRHIMLHGIRGFKNYPDDSLFTVCVDKGIFLMEE*
Ga0153700_1034910	F021488	GAGG	MSDTLFNKEDFDNIFGIPKVHIKIDPVIRNAVLEEVALEFDAMRIAFGDTAHSFATYVRDMKT*
Ga0153700_1034913	F002653	GGAGG	MNYEDYDGSMTEAELHRRVTAMSDEEQEHFKLLIHKLVMCYGEGKAQGVVIIGRAEDAFAGVVTLNCNEMEASQLMLAANDFFGFLNVLDAPPKENFN*
Ga0153700_103495	F023041	AGGAG	MNNPPYDTGKVKIGLTYTPPPPESTPESDWIQGILLGDKQGMDDLLLTTIQSLGLIAFIVIVMLLTGGTSNA*
Ga0153700_103496	F010672	AGGAGG	MPDIQTAFKSALTKTLTEWDDDEGTPVPVPSSAQPVSISSVTTQGIPMAKKTFNVTNNVSRVTFDYIKNNPGSTRKEIIQALEYQGFGGGSVSSLIAQMRRNKMIHENGGLHYADIEEYRPIKTLKAMNKEKDATPKRKYEKKAVTGIGALLREKLEAAPMPSQDALDASAAFSMGGHAPQRKAFVSLVRTQDPDEIIKKLTVFQARELYDRLKQIFNA*