Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10332 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10332 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	24734
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (71.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

24734

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (71.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F007170	Metagenome / Metatranscriptome	356	N
F008689	Metagenome	329	Y
F009888	Metagenome / Metatranscriptome	311	N
F058132	Metagenome / Metatranscriptome	135	N
F078722	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1033211	F009888	GAGG	MAVIFDLTEDPQQVVQASAWVGDWHSYVVRLVDELGSPIDITTGTLGVTFTNIATGSAYTFPSGSVTLTKQYSAQGILSILNPAAYATAAMIRITVSFTVSTTVRRFGPLEIEVLAP*
Ga0153700_1033214	F001733	GGAGG	MNSISISRLVVVVLIAFVASFSTVFGDGVRTAEAKDIAELGAVMAVYGGKAVAAGLTAAMSAALGFLTMPFKGTGVNALKVGK*
Ga0153700_1033215	F078722	GGA	MGASEWTTIGLAAVTGIISLLAYIIKFLHRMDKRGAVDTAKIEDHGERIGRLETVTDEMRTSITKLEAKR*
Ga0153700_1033227	F008689	AGG	MRFGEVIQALMAGGGNAVWRQEWGGSVFLRYSELWNAFEVHTTGQAVRQMEELTLSPGDLFANDWAVVNLDPRTGEVAK*
Ga0153700_103327	F058132	N/A	MALQSLKQIPKDTDKGLLTVDLSDVAGDGAELRFREPKAADLFPDAKELGSLRVAFAEFPEAMLYQIYLLGRCYVADPADSLEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKEAKNALEV*
Ga0153700_103329	F007170	AGG	MAFEPAVIEQWIYETLTGDTTLMGLLAPDNKPNGFQMGVYNTIAPQTDPISRKQPVTPYVVFDRAGSAGQDQDTLCGSRVFTYPTYRITVWDTATGAVSMASSATIMSRIDTLLDNIHVSSTTPRFYVRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10332

Overview

Ecosystem & Geography

Associated Families

Sequences