Scaffold Ga0153700

Basic Information
Taxon OID	3300011339 Open in IMG/M
Scaffold ID	Ga0153700_10304 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011339 Open in IMG/M

Scaffold ID

Ga0153700_10304 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26348
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (78.05%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26348

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (78.05%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5254611	Long. (^o)	127.0168945	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5254611

Long. (^o)

127.0168945

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039599	Metagenome / Metatranscriptome	163	Y
F046202	Metagenome	151	Y
F077007	Metagenome / Metatranscriptome	117	N
F078231	Metagenome	116	Y
F082122	Metagenome	113	Y
F093271	Metagenome	106	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1030416	F093271	GGAGG	MRGKKVKEKMSIVTVVSFDTSSRFALRIAIAHTVGSMVTLTNLGSVTRGGTNFIPSHDLKRMLETSGQRATEVTQGNGND*
Ga0153700_1030419	F078231	AGG	MKTEPDLIDIYAMFALMAVMQKHAKVAKSKIDIAYEAFEQAKAMMEVREDFVRERSE*
Ga0153700_1030421	F046202	AGGAGG	MFDSFGDFFWTFMAMSGFMFWICVVIFVGMVIKRNRAKRKGYYE*
Ga0153700_1030423	F102518	AGAAGG	MKTIFIAVCAVSALVGCSSSKEPYVTAQNLVMDRNIQPLSRGEQIDAIKDCQEAGLRARVIYGKRLVNGYSTETVIDVLCSNKYAF*
Ga0153700_1030437	F082122	AGGAGG	MREETLLEKVVIAIMFIAFLVFWMWVPDFTLSEEDCMKQDSSAYVKNLCSESQAK*
Ga0153700_103045	F039599	AGGAG	MLSEETVKQIFFQSDRPRKDPLIADEVDIMQFAHNIELYLAVEHARKEHARCVKIVKDLNRAVGDKLETLRPA*
Ga0153700_103049	F077007	N/A	MRLMRNQHATHVDFFQFKGLIETNPKATPCNIDMVFERKCKFFVGEWKREGEGISQGQGLLLRNLARQPQFTVVIIQGNTDGDMVVEKFEQLCSDGRFRVRGKSADDLKKFVTRWYNWADAQEFQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153700_10304

Overview

Ecosystem & Geography

Associated Families

Sequences