Scaffold Ga0153700_10191

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10191
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32052
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (66.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006502	Metagenome / Metatranscriptome	371	Y
F022814	Metagenome	212	Y
F057002	Metagenome	137	Y
F087962	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1019117	F087962	GAGG	MNRAERVRNYLNDEFFVELLEAQKNLYKSYVFNSPEHDVDGRERALVKLRAMEDFEASLRSILQQEEIDKKRFKVF*
Ga0153700_1019125	F006502	GAG	MKPPKTTIMIGLLGDKPKMAEKEEGGLLAEDKSSCPLSTQDADINRGNMKKAVLTANYGERKDGEGKCKACEYFNTELSDCGVPKDMGHCDIFDFVCKGNMGCDAWEAMGKEEMEEEGEED*
Ga0153700_1019129	F022814	N/A	MRLNSEVVRNLYASIYCCYPFTKWKMPLPEEVEFIVTPDPEVMGTYLLDTGGDYEHNITISSARCGQYYTPLITLCHEAIHMSFHRQKGDKWMQHGKAFRTRCKMVGHELGLDPLEL*
Ga0153700_1019149	F057002	N/A	VEALLIASKQTPRDLLMSFTRSATPYRSGGITKKFNQQLHDQYDPPARKAVSNWIQMKWGANCIPNPNEFGVDLIVQREGKPVGYIEVEVRSWNYCHYSTIHLAHRKEKLFQHDLPVLFFALTQDLTHAYWCHAKVVKGYPLIEVKNFEVPTGEMFFDIPVEKFKYVDLTDQF*