Scaffold Ga0153700_10166

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10166
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33658
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y
F024506	Metagenome / Metatranscriptome	205	Y
F026483	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1016614	F022651	N/A	MTQNTTIQNTGDLLGFLATQAESRKDWFGFSQQRMTAVTLAHDIAKAHAHHMTPEDVVTYALALNQEIFKRIIKG*
Ga0153700_1016623	F024506	GAG	VTLQTILSIAETVGINDHKFAGQMLSRNMRISTSEILTVQPFEFTLKPHQYLLYSQNRAVLSALRVADRVTEQYLNFASTGWTNYINYLGNMTGVQAAACQIQTASANKTIVLGNLPTITSTLYIVRAGDFIQIDRYAYIATADVQRGALGTVSIPVHRSVMTTLTSTIGAVIGQYGTTTALGGSTYTGITFPVILREYPTYELTPITNDSFIAWTGPFTAFENVL*
Ga0153700_1016632	F026483	GAG	VIYIPVLYICVAAHCEFLQQKSYYLDREMCMAVAEEKKQDYIKLGAKVEATCIDVTVQTNRRLYGS*
Ga0153700_101668	F002997	N/A	MAIARFENIDVNTLSFGSSTFGEQSTTQTLWFKTRARVHSVANNVKISEKYRVYSDIVDFTLNYTPNIKTIVDNQNAYSITWRGFSWRIDNVRESDDRMTARLLCVRNDPVVAV*