Scaffold Ga0153700_10141

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10141
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35233
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (75.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F006696	Metagenome	366	Y
F012002	Metagenome	284	Y
F023542	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1014117	F000961	AGG	MNTPETIDPIRYGVLWQKVQDYERRFDEMSAKIDKLETNIDKLVEMANQSKGGFWMGMVAVSAIGSVLGYVANWIGKH*
Ga0153700_1014118	F012002	AGG	MRWAVLLLALITVSVAQDRLILSTEPPPKKPPKAPSNCPLQELYVIGWATHDPAERHKAMLEWLDRSKCSADDYVLIWNALPEWAGTSDSPMLRAKIMEKVR*
Ga0153700_1014127	F006696	GGA	MQFFKFLKNYYKELTPIEVIQRELAQAHLDRLEAESACEYAKACHDLSLARIERLKTRLGEYK*
Ga0153700_1014133	F023542	N/A	MDILEIAIKASGGTGRLAYILDVRQNVVSNWRQRGVPKGWQQVLRYKFKKQIAEAQKMV*