Scaffold Ga0153700_10123

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10123
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35961
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (54.55%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005206	Metagenome / Metatranscriptome	408	Y
F010688	Metagenome / Metatranscriptome	300	Y
F014610	Metagenome / Metatranscriptome	261	N
F016803	Metagenome / Metatranscriptome	244	Y
F020137	Metagenome / Metatranscriptome	225	N
F025727	Metagenome / Metatranscriptome	200	N
F029366	Metagenome / Metatranscriptome	188	N
F045703	Metagenome	152	N
F048263	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1012310	F020137	N/A	MTAHPTIIEAAHLLRQHWPTCSTWNDDQLLNWIGLFNAKKLIGIVKNEEGKCVGVGAVRFLNSIEESEDLNNNFPDGHIAWIEIAIGAEPHAVQTLWLAMMGLCSKNVTKLGGFRKGISRLYDFDRYSKLLMNRRISYGRHL*
Ga0153700_1012317	F001272	N/A	MIKLELTQEQANNLLQLIDIAVKAGGISNAKVGLPLVDLIVAAVQPKAE*
Ga0153700_101232	F005206	N/A	MKFTVDRSQAEVKPFAAPGEYTVTVNSCKDDGLDKNGNPVAILRFKGANGEVVSDRFVLKENQMWRLQALISATEASINDGDQYDFSIGGAFLRFLQGFVGLQLVVVLEEEKYTDKHGAEQVTLRVKRMKKVPVDLDNL*
Ga0153700_1012322	F014610	GGAG	MPIYTFENNGKSIEHIAPMGTDSVVLDGKRWTRQPVARFGVTGFAREAELKDHVKKGFSRMEDRQGSRFESTFSKNQIRKIWDI*
Ga0153700_1012323	F010688	N/A	MRPKTATIMVIAVGPKGHHRAIGGAPSHSACGCEEADNNAPMISIPVEALSTDMEDGQQAMPEVGDEVLLDDVRGILKKLENGEAYVEIRSVNGMPAEYEKTGEDAMEAKKPMDEKGMRKMVSEYDSEMES*
Ga0153700_1012326	F016803	GGA	MISFTAKLRAAWAFTRHQRWVDPLPWSREDATALNSFFKSETGKKFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADRESITGQEDDPDSATNT*
Ga0153700_1012331	F029366	N/A	MGKVMTTDKRVGKARGGRPEKQVTDEMKKTATRAAYLGMPHDRVAILCGFSSANPTGWGQYLVRHPEFAQELESARVTGEVEMQGRVLDASNGWQGAAWLLERTRGYVARASLEHTGKGGKELSISGSLLGAFGGGK*
Ga0153700_1012341	F025727	N/A	MSRHQYPLVESIKVVRLSEGRTIRILRDRTAENLKLNYGDGDIHLTCVAQAHDPLEMVKTLARLDHIRSVEFTDDKGNGLIIHKQK*
Ga0153700_1012345	F045703	AGAAGG	MNTPPDLSVAFVYKHKMTGEVLVVDIDRARELDAARPYWQHVSTVNPIIILQLIVKAKGRARTKIIKELSEKP*
Ga0153700_101237	F048263	GGAG	MAFENFLQNAANFATAGLYNQLSGRDQELERQRLAEAEAFRANPELVREAAKYDPSIMDRLGNLLTGGLYGKATGMDEKLEQRALAMQQIREDELQRRMMERMKGYGIAPVEEPVGSELNPDRSAAPMPVAPGTIRKKNTFAGGY*