Scaffold Ga0153700_10105

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10105
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 37713
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F058807	Metagenome	134	Y
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N
F099290	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1010511	F058807	AGGAGG	VNVELIKEHENGDATYMFDLTQEEAKALLSYGILEAIKAGIRSGEKITVEGVDLEDISDTGRTS*
Ga0153700_1010516	F005320	AGAAG	LQLSKLTLKENEMSIDSIKPVKVAGELYWSNWMKEHNKKFNEANDKYECTLGQLSEAACGKLEELGIKLKDKDTMGKYIVGKSKFVFEPVDEEGNPVDISKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKVVITELKVYSPDGAEATEEETDDIL*
Ga0153700_1010517	F074881	GAGG	MVFNVEPNEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQDKQEAATIAAE*
Ga0153700_1010518	F088893	GGAG	LVTTGDKHIEKNQIVFNVEGDTFKVKIGEDLDLEEVYTVLVSAVVHLEELALGMVAHPSKELH*
Ga0153700_101055	F099290	AGGAG	MTLEFETKAGLVFGLEADQLYILDEEDNMGDEPVPVIYLHIGFITLAFILD*