Scaffold Ga0153700_10042

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10042
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 55792
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (87.34%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002986	Metagenome / Metatranscriptome	515	Y
F053252	Metagenome / Metatranscriptome	141	N
F103147	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1004211	F053252	GGA	MFAGMGELDTVSAEDRDAIFARVYVEQRSLKKANAAEIACVRAGITSPELNMSIVASRQLARAEVQRLIMAAEAEGVQAERREYTRDLFLDELQAVVQAAMDKGAFPSAISAVKAQAQLLGMLDQTVNVNHNVSAKDLSLSELRALVAREVVNSPVIIDAEVVRGIGCDGDE*
Ga0153700_100426	F103147	GGAG	MSAEELGRRVVERIGELRDRATEYSLNVRFRPSTFGEKHIPALTAEEIALQVLEGNALVRAYTAAISVINDEYKRMLQPDDDKKPETRKGSMY*
Ga0153700_1004264	F002986	GGA	MAEIDETKARLQTHEEVCALRYEGLCARLKRLEGVGIAVAGFIIAMLLTIILKVG*