Scaffold Ga0153700_10026

Overview

Basic Information

• Taxon OID: 3300011339
• Scaffold ID: Ga0153700_10026
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 62426
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (17.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5254611
  • Long. (^o): 127.0168945

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015337	Metagenome / Metatranscriptome	255	Y
F024553	Metagenome / Metatranscriptome	205	Y
F040094	Metagenome	162	Y
F044499	Metagenome / Metatranscriptome	154	Y
F055726	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153700_1002640	F044499	N/A	MKSTKLMLAFIATFLITWCVIGLIGYLLSDLSYKECMSHTAMIYIMFLLGWIPGLIICSDLDKDY*
Ga0153700_1002646	F040094	AGTAG	MRRRILKGTLVASTNRFTAIRARRLIVEVLYNFRNGVVKEKVIDVRERIEQ*
Ga0153700_1002658	F015337	N/A	MKTIELSPTDFWHFRKLAFAMSLAFGCTIAHGVYIVEASIDQLEQLGY*
Ga0153700_1002674	F024553	N/A	MGKLNKEIQEVIDKAVDNIYREEIYINDKHEYDYHKHEASSNITVHTLYYSDDDQWGDNMKKKVAMQLVDNGDGVEIIGACNKKHISYLEAEQLHILLRLSSTHVVYKIAEPSIKKEF*
Ga0153700_1002683	F055726	N/A	MDWVLEDWEYPNDHIYAMERNHDMQLEWQQWEEEQENKKRLPAIIKVEIPILTDEAECNTRTVRRAHQKRL*