Scaffold Ga0153699_1948

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1948
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10228
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041487	Metagenome / Metatranscriptome	160	Y
F062766	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_19483	F062766	N/A	MTANQMADELELKLDRSDSFGSPGYEDFELSSVLTEAEHLYVKKFYDELNNRKGKGFEEIEIRNQGLAALVQDAATCPVSASQVGVLATNNVIGKFFDLPSNHMYTIFEQCTIDKNLCGTTTPMIAYVITIAHSEIQRFDWSKYKRPYYSTTGDARVWRSEFSRTVTGINPNTTATAKRHELFTDGSFNIVDYHMRYLKNPEAIVVDRDVPTNQKNCEFDESTHRVIIDMATDLMMQRVKEQKVQIIEPLKDLE*
Ga0153699_19484	F041487	N/A	MEKTATAEKIVYGSFLQDRIVSIKPVESAGKWSNLLVANQDNKKDPFLYNKIKRSYQVPLNSENRGGGVKVILDDSVRVKIQKYTESHPNGMTQKEFFEKELGVDLNPTLIADKNFWRSDRRGRVILTKEGATLNLNYSLDMLKYLILLSNKMLVSPSYDERVNKATYEFMIVDESKVTTKKLAEANVKAQAFVKFAEITNSKKSTIGFIKSLGRAIPATATEDWMKAEVLNIVDTNPAYFLDIVNHPQYNERIFVQEATEAGAIIRKGEKRYTLDNGAELGELTDVINYLLNPDNQEVKLRIKAKIDMTKRN*