Scaffold Ga0153699_1938

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153699_1938

Scaffold Ga0153699_1938

Overview

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1938 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	10252
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_193812	F039000	AGGA	MTKKTDDTDKDIGQIMDNAQTLLNFCATTFAKPSEAWFACLVSSAILTAELSVPLDKFLEGFEHAYSDAMKAKKGMGASYDH*
Ga0153699_193813	F031377	GGAG	MITNADNYVPVRRTNQCLTPFNTGKVQIGLLYQPPPPEMTSSEEIIQAALLGVGSIHSEPPLWPLVLGSAIVSFLLIYFAG*

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