Scaffold Ga0153699_1809

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1809
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11352
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F032255	Metagenome / Metatranscriptome	180	N
F050368	Metagenome	145	N
F054813	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_18091	F054813	N/A	CELEIAVELQRSADDTDEADVLTTVQVLDNRILPLFDESGASALDAPSNDASGPFTAQFATPLDFGAASISNRSRTFTRTFTLYCSATL*
Ga0153699_180913	F050368	N/A	METQDMINEEEIRRLPLWKDWIDRNEHRLAYGLTVTTEEMEAALEEKAHSMAFQMAAHNIRVVLRQRGMNFSQRGLRGAGFQILPPNTNADEMEHLNRVALNSLKASVILGTKTNLNLLSDCERRRHEAVTEKMAHRLALLGRSNTNLGQEIAKQITQ*
Ga0153699_180916	F012771	GGAGG	VITKAKKPTEKVFIVSAETHAKLKEYAKRKGYKLQYIADEAVAEYLKRKEGK*
Ga0153699_18092	F032255	N/A	MANSQGLAYQFGSPATVTMYGIDNTTAVFTGLASIESYDVTHEADTEEVRNSAGEVVGHIGYNERVTVNLNLIPSGANAAAALAFCSLAPVNGTVEITGAPNITLMGSSNVLNTGRFIYAGGGSVKMTQTGKAMVSITVKKYKNLTTGAAIALNV*