Scaffold Ga0153699_1795

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1795
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11468
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F011844	Metagenome / Metatranscriptome	286	Y
F093875	Metagenome	106	Y
F103223	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_17952	F093875	N/A	MIGEHNLRAIKRGDTWVLPLSFWEDECQEVAINVSTYTFKLMAKNSSGTTIFTWDNAIFVQGATNERIVTLSAVTTATYTLGEFNYELQVTTPSGVYTWMQGFVQVVDQITS*
Ga0153699_17956	F004112	GAG	MIRGSESRKVDTYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEHSDNVMNEDEMREIFKRLGK*
Ga0153699_17958	F011844	N/A	MGQILGSLQNVEIDVAGGSSFKNLVCLRTSSVNTTVDSTTEQTNCGPLTSVADATMGVDFDAVCEVSPSVSQISYEDLLAAMVGKTLVNVRVQNPVVSGSSIGAAYYHQFLGYVTSLTLNQSTTEFINFSGTVTSTGLVDVTP*
Ga0153699_17959	F103223	N/A	MKDCSNNIRTQYLSILNGNISYNGRNVPVYGNDTFETMPENYVIIGDITETADNNNQLFVSGADVVIDIFSEQYMTRNNSIIDDIADQILTLLIPTTGVQDIGDNEFQIYATSRTSSRYLTMQEGNNFINRKILIINNSIIQK*