Scaffold Ga0153699_1790

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1790
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11513
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004955	Metagenome	417	Y
F043388	Metagenome	156	N
F067726	Metagenome	125	Y
F103251	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_179010	F067726	AGGA	MMDKYVITSSRVGEIGKAFIAGPSDDIDWLIAGGFIQRSDTHPSKGAKLAKKPDATEPQE
Ga0153699_179011	F043388	AGGTGG	MAYTDFLNEALDDLVTTLQTISGLRVVNDPRNIAPPCAFVDAPTIESWNGNIVKMSFPVTLISNGPGNLDALRQLLSLTAQLVTKDISVMTANPKVVSVGGADYAGYELIIPLQAQDS*
Ga0153699_17903	F004955	N/A	MTFNPSKALIALVGLICMTVLIAVGAIDQDQGLPIITMIVGYSVGNGMAALTNKPVEPIIKKKEQ*
Ga0153699_17907	F103251	AGGAG	MSMQVQGLESTLKALKKVQPEVQKQFFKDAKQIVKPAVNEAKNAYRTDYLSGMTRAWVNKGRTIFPWSQSAAVRGVGVSTSLSKKKDAVITIVQKDIAAEIFDKAGKKSSNRLGEALNAFGTPSRVMWRAYEQHAGRIESEMKVSVDEVMAQISQLTKALVL*