Basic Information | |
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Taxon OID | 3300011338 Open in IMG/M |
Scaffold ID | Ga0153699_1773 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11698 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (6.90%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Seoul, South Korea | |||||||
Coordinates | Lat. (o) | 37.5955556 | Long. (o) | 126.817072 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F004839 | Metagenome / Metatranscriptome | 421 | N |
F014956 | Metagenome / Metatranscriptome | 258 | Y |
F021732 | Metagenome / Metatranscriptome | 217 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153699_177324 | F014956 | GGA | MITIQEFALKVSLSVCPDYVVEPFRLKKWWRDKGARELEKYFFAGYKVDYDQEIDWKAISDHKKQMWYDSQNFKIQAGNEYSQRKG* |
Ga0153699_177326 | F021732 | N/A | MELTTPFFHLQKLTKMNITKYTCKCTLDKKKGHFVHVIFSHGFGLYGQTSPHSPEDNMEIHGWTFEPQDIDLELYPPITRYNLMPLVAENEIDWVIINN* |
Ga0153699_17738 | F004839 | N/A | LFTLNNCFHRAASPAALIFYTQQKQNQMEKNFNNLQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALVEIFFGLQEQYEGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINTPEPIKRRKRKPRVKPEAKENNETTGATAKNFVSSFKTITL* |
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