Scaffold Ga0153699

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1768 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011338 Open in IMG/M

Scaffold ID

Ga0153699_1768 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11742
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11742

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (76.19%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5955556

Long. (^o)

126.817072

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001326	Metagenome / Metatranscriptome	721	Y
F002421	Metagenome / Metatranscriptome	560	N
F002794	Metagenome / Metatranscriptome	529	Y
F003964	Metagenome	459	Y
F006139	Metagenome / Metatranscriptome	380	Y
F009743	Metagenome / Metatranscriptome	313	N
F010535	Metagenome / Metatranscriptome	302	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_176810	F006139	N/A	MEVEIVVSVIGGGFAVVVALISKIGRDNKKDHGEVHRTLGRIEEKIDNHVENHR*
Ga0153699_176815	F003964	AGAAGG	MAEVSARVEVVGLKDALKTLNKIDKSLRREITKDYKRIVQPVIDDANKLVPSTVPLSGMARNWKTGSGFQMLPWIPGMKQKISAKINTRAIKEYNGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQNDVMSEMEQLVKRVMDEANRETA*
Ga0153699_176816	F009743	AGGAG	MKIKLQLKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTQPLYSDYCCWMHTILKLKGEQIGDNWREWISKNPDIDILPVLDETDPNPTDAAPTAAN*
Ga0153699_176819	F001326	AGGCGG	MATYTVTNKYLIDNFAVLQLLTPSEIAVGSSITVAGVDATFNGTYTVRALPQYLFLGVDTQGDLLYDYQVPIADQVLYAKTADDVERVAATGTVSYSPVCTWVSAADVMTYLGITITNPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPNGDATLGTLMYCAALWRSRGSIEATYATFDGMGTAPQQSLTPIVKQLLGIPRPAVA*
Ga0153699_17685	F002421	AGGAG	MKTCTICKETIAYPDIQGKTHFVCDGRVPVRKQAPFIQGMLASQSSADARWTREEQNKVDAAILHVARTKGFFTSDDIWKHLGDDFPVTKGIAGRLNAAARRGHIRNTGELAYAQRGGAHDHAQRLSVWAGI*
Ga0153699_17686	F002794	GGA	MERNTMSEGAAWNQGELTEETRKLVLERTEMVNHTMAMFGLIDEIMNVSKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAHS*
Ga0153699_17688	F010535	AGGA	MTDIQIFDYSVYTGVMDNGQEILVQIFTNPESGKFLLGQIAFRTATSTWGMPIPLEKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153699_1768

Overview

Ecosystem & Geography

Associated Families

Sequences