Scaffold Ga0153699_1701

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153699_1701

Scaffold Ga0153699_1701

Overview

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1701 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	12474
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (44.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_170124	F006107	GGA	MNAVALRAELAVADYLASADWSAPGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCELEIAIELQLSADDTDDADVLTTVQVLDNRILPLFDESGASVLDAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATI*
Ga0153699_170125	F005024	N/A	YLMVRLFVLVPPKSPGQERRRISDYLGTPLGNINRKSKKTGKRIGKSRLLRRVHLIAQSKEAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKIIRIYNKGFTQFQSPKWKPLSKPAGYKAPKKTNAALVSLANQYGLPEENVAVHKGTKARGIQATPGFNPTASVVMTAGVADNQYNRVAMIYNQAMQKAMDDELAELTNHMTEAMLANGKVLEDNGIEIK*

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