NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153699_1691

Scaffold Ga0153699_1691


Overview

Basic Information
Taxon OID3300011338 Open in IMG/M
Scaffold IDGa0153699_1691 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)12644
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5955556Long. (o)126.817072Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009003Metagenome / Metatranscriptome324Y
F026004Metagenome199Y
F037731Metagenome167N
F042339Metagenome158Y
F053068Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0153699_169111F053068N/AMDQQSKKETAIRRLHMALKKRFQGQAIKMPWSEMEGFLRAAETVEMTNIFSAYDDGYTDCENGIPNQTKVKADESDTNV*
Ga0153699_169112F009003N/AMKAKEKAWQLYSNYFDIVENGKQEGNLVDAHIKALNAALYCVDEALSNAPDDIVNDFDGTGEYYSVKAYYMHVKNELLKLSKHDAKGTEQVEHR*
Ga0153699_16913F037731GAGMATKKQKNEQPNKVDLKGLRYKLELFDGFWSIPLAFLVFAVSGTVSVAYFGDALISTEYIQYIVLAAMVMVFANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAYLYILHMLMTVTA*
Ga0153699_16915F026004N/AMEKDNLRNTVLIAAVAVVLLIMIITSVKSCNENTNPAIQRLQGINDSLYQIIDANNIKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ*
Ga0153699_16916F042339N/AMMYWYATAQEIDSLYQMERLKVTYYAKITGIQASSYETLAEIYKNKESIEKAIATEKDNEIAQLKKRNRRLIITNTALTLGITAVAVSTIYFTIF*
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