Scaffold Ga0153699_1567

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1567
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14446
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_156716	F002764	AGGAG	MKEPEDEAFEELAKRQGDWGLQGSRKHQIMRYAENNARNEVIEEVAQHIEKCSLAFGKDTIQSFTAYVRGMKK*
Ga0153699_156717	F011742	AGGAG	MQTIEFVPFEWDDDGFNPEIDRIEVDYQWHESDDSVGLISYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIANERA*
Ga0153699_156718	F020138	AGG	MNQQQITRLNAFWQDVEAHKALNPSLPESALVILKSIALDALLCAQDIEQIGVNDANN*