Scaffold Ga0153699_1533

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1533
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15031
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_15332	F001733	GGAGG	MNSISIGRLVVVVLIAFVASFSTVFGDGIRTAEAHDISELGAVMAVYGGKAVAAGVSAAMSAALAFLTMPFKGTGINALKVGK*
Ga0153699_15337	F031872	GGA	MVESLVVDEWIYDTLTADDTLQGLLAVDNRAPSYQQGIYLYFAPEKDPISLRQPQVPYIVVRHTDSGQTDTTSVCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNNQSVNSTTPVFFLNRQSVSSSIDVSQDGRVDNGIVQLYVATITP*
Ga0153699_15339	F033435	AGGA	LSSIFDNIPKLEGRPNYSVDIERFIGAPGSFTFREPKASDLFPRPEVQKALKIAFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEIPND*