Scaffold Ga0153699_1443

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1443
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16584
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014143	Metagenome / Metatranscriptome	265	Y
F019800	Metagenome / Metatranscriptome	227	Y
F046898	Metagenome / Metatranscriptome	150	Y
F050192	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_144312	F050192	N/A	MKRPWKPHYHKHKGPVEPDRTTLLMAVARELLTTWEITQDKALVDRHLAAVDKVYGAGSEASVRQYMHQVKKNERCG*
Ga0153699_14432	F046898	N/A	MKAIGRDIKQRQLDIFEQRDHQFLERCRALAVVLCKQQGQVSINDIRQFIEVPPGVHPSVLGAVFRTKQFKRVGFIEAAHPQAHARVVRVYSLATTKE*
Ga0153699_144326	F019800	GGAG	MSWDELDAIGQVDIREANQQRDDLARLTLRVFSTEDGNKLLQWLRDVYVNVPIAVPGTDPSHAYFAEGQRNVVRDIEARINQARKL*
Ga0153699_14433	F014143	GGAG	MNTRFLTHVRRIFAGYDAPPAVIRSYQLQWVRSVRRLGDNWLMAKQIQKIQS*