NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153699_1434

Scaffold Ga0153699_1434


Overview

Basic Information
Taxon OID3300011338 Open in IMG/M
Scaffold IDGa0153699_1434 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16699
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (68.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5955556Long. (o)126.817072Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F001424Metagenome / Metatranscriptome698Y
F003407Metagenome / Metatranscriptome488Y
F003662Metagenome / Metatranscriptome474Y
F006063Metagenome / Metatranscriptome382Y
F015839Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0153699_143411F006063GAGGMTDLLTAMHLSVMLLDLKIRMMEAINEDRFDLAMTYHLLILVRTDELQAHKWAMSPQAWAIYETIHP*
Ga0153699_143412F003662N/AMKTKQATVTLKGQEWIVLDTDEAQDKKIFCKLMSLDGTIVWHAWVDINQIVGII*
Ga0153699_143415F001424GAGMMVQQVEQLSTGYPQSEKWVEDERVFCHQCSNAVEVEQRQSMPAEQMERHRKVNAKPLQWMFDQAKIRNGWATVTWSEHQCSQTGLAAFPTDIKHRCHLFQAKASAVESEGWWLT*
Ga0153699_143421F015839N/AMKNTTFTASVASDLFNAGYSCDGHPFIAEQFYVVIENAAGKRFRHQAIFNGTQQVICEETGDAYFPDLRAEASAKAERLASRVNAALEAGQFISPTFWDEIDPAYGSDEYADQGTEAKRLFAEKAAA*
Ga0153699_143422F001182AGGAMKPTPACPKDLYQFDCEIEGVDLVCFLEYSPAEKGSTDSYGAPYEPDLEEGMMLNNAYIAGTDVDIAHMILQSLVDHIEVTALEKFHDK*
Ga0153699_143423F003407GGAMTNDLPPAIDACLDLVNDLLSPEVYGHAIPAEVKARAFVVKTMLERLKARMETSTWPEA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.