Scaffold Ga0153699_1372

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1372
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18001
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F073284	Metagenome	120	Y
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_137215	F073284	GGAG	MKKLENMTQEEKVEAFNTLQIFIESAVESEQDEPKIFKLETELRIDLVLVTLKEIFGLRDTA*
Ga0153699_137217	F014133	AGGAG	MNHLKQAWEWLINHWVMPSPAELIAEELVNAQRSKLRHQSAQEYHAAIVAYNVARIKRLEGLTAKQEVVE*
Ga0153699_137223	F011223	GGAG	MKIQFVEDEEETPSVFERMWDYLITFLKCVGVFAAICFALGYISTKQVQAKQCEPTKVVLARSIFK*
Ga0153699_137225	F104718	N/A	VVVIMSEPMQKEIDAIVALMAPPPNSTGLLTARDVSDIVRRAASKGALVGWLAAEKDVHARMSRTLVQLEYENQCNKDRVKELEMEIIGLQQ*