Scaffold Ga0153699

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1362 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011338 Open in IMG/M

Scaffold ID

Ga0153699_1362 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	18195
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18195

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5955556

Long. (^o)

126.817072

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F027413	Metagenome / Metatranscriptome	194	N
F030767	Metagenome / Metatranscriptome	184	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_136214	F027413	AGG	MSAWLPEWRIIVGTTVYDNVLSVTMDTGRADIDLQCNAGYARMDIVNVNNTAFDIDVTDSLTLELKNSAGTYVPVFGGEVSDFGISVRSPEEFGYVTIGNILAVGSLAKLTKALFPDALAKTFDGTQIYDILNELLINSWFEVAPALQWSAYDPTTTWANAENVGLGEIDTPGLYEMISRSADPFSSYNLCAQIAQSALGQLYEDKEGRVCYADADHRTAYLSANGYTTLSASYATPISVKSILQIGKIRNSLVYNYGNNYANQATATDAASIANYGRYQRSVSSNLHNLSDVIDVMDRELGLRAIPREQLQSITFRLDNSELPDVERDKLIDVFFGQPVVLNDLPINMFNGSFNGFVEGFAIRATPQFVDLTLTLSPTDFSLVAPQWDTVSPANLIWTGVNATLIWQNAYGGLT*
Ga0153699_13623	F030767	GAGG	MATYKTKCRLCGKMTDHIERVVTDNLPPYVKSLQCVKCGVMGIVLMEDVKDA*
Ga0153699_13625	F066777	AGG	MGELTFIKDGLATTIHDDGEMTVVAAKQCDECGTWQTALGGFSYRDVAGEIVIWLCAQCRA*
Ga0153699_13626	F007029	AGGAG	MGFLDNYEDVNARIKRFRSEFPSGRLVAYIEDLDIIAGTILVKAEAYREYEDTVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLDHNSRPTVQDMEKVENLPADSDPWSTKASIEDMATMASSILEIGKNLGGEIVPEAPRCPHGTMIWAEGTAKSTGKPWAAYKCTERIRANQCNPVWQVLGSDGKWKPQV*
Ga0153699_13628	F015095	AGGA	MERAQLVIGIALGSFTILGLGAGLVRHLVKYYLGELKPDGNGGHNLAGRVERIEKRVDKIYEILLEDRLAK*
Ga0153699_13629	F002269	AGGAG	MKEQAIAAAKSYARASLASVAALYMSGITDYKVLANAFIAGLIGPLLKALQPSEKQLGVGSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153699_1362

Overview

Ecosystem & Geography

Associated Families

Sequences