Scaffold Ga0153699_1314

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1314
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19581
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (28.95%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F011136	Metagenome / Metatranscriptome	294	Y
F026004	Metagenome	199	Y
F042339	Metagenome	158	Y
F043894	Metagenome	155	N
F053068	Metagenome	141	Y
F069698	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_13141	F026004	N/A	LIAAVAVVLLIMIITSVKSCNENTNPAIQRLQGINDSLYQIIDVNNIKTDSLFLKIDSLQIHQDTIIQQQQITNEIYRNETYNILSSTPSNANAQFRATLKKSDSLLKAGFYTRTYNLRSAAFQSQLQ*
Ga0153699_13142	F042339	N/A	MMYWYATAQEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYKNKESIEKAIATEKDNEIAQLKKRNRRLIITNTALTLGITAVAVSTIYFTIF*
Ga0153699_131426	F043894	N/A	MRKQNELNGLIARTLGSKAALLRAMQRSNTPITKKTLYNWCMDYRTIKVAQLVNLANAMNVPICEVINSITIKNEGDE*
Ga0153699_131429	F011136	GAGG	MDRPAQDVEDIVCGGKVEAYVNRAIWLSWHSNRSDYAIKYRKYYELHVDKQVEDTKQDETWIGAFIDGEYLYSAIGRMNEFDAILLRLYSKPDFDYKELSVTTGIPYPYLRTSIHRALKKIREYVKLQRSIAHSEREASDMQKM*
Ga0153699_13143	F069698	N/A	MQFEPRDIVTIVGGAISLTGLYYALKRDVVKVSSALGKVESYHKREVTMLSDSIKETKEEFNTKLNTMKDEQNKAIDKLEAKIDVIASQNMTISTNLAELAGFIRGNK*
Ga0153699_13147	F053068	N/A	MEQSKKETAIRRLHLALKKRFQGQAIKMPWAEMEGFLKAVETIELNNIHEAYNDGYRHGESGLPNATHE*
Ga0153699_13148	F009003	N/A	MKAKEKAWQLYSNYFDIVENGTQEGNLVDAHIKALNAALYCVDEAMVNAPDDIVNDFEGTGEYYSVKAYYMHVKNELLKLKHDEKRTEQVNQ*