Scaffold Ga0153699_1313

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1313
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19585
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068824	Metagenome / Metatranscriptome	124	N
F080908	Metagenome	114	N
F081331	Metagenome	114	N
F084229	Metagenome / Metatranscriptome	112	N
F097318	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_131315	F068824	N/A	MNWTTEQLKEKGYILAPDGHYYYADNYKPPSRRLLDTLTKHSPKRSLDKVHKAKAASKDCTAKCNPQYTLGITRFSTKTLDVDNLAGGCKPLIDQIRYAHLIPDDNPESVNITFSQVKVKTQAEQRTEVTITQA*
Ga0153699_131319	F080908	GGAG	MSEPHYTSEIERLKECDKDYRPIAAQLAVYCSAAIFALRAANKDLEDAQVKAEIIPDPFSAQAIDDMFAQYLEALRDYPELMLIALKFIQQSQ*
Ga0153699_131333	F081331	N/A	MNELNFDKLTGNGWKQFKDFLYQSDIAFYQTFAGHEECRCNEGKKKQVEVYIYDHRKHGYPSIGYEVKCTGELPDGTWLELKSHSLSEDHVDPKAQELLEVWDWSVKNNLTKSKS*
Ga0153699_13135	F084229	GGA	MIEPNIAQKAVSFVKSAAAFVRAGMPIRNKEQIEERLLICNQCVHYDATAFSGAGKCGVCGCNMEIKLVMDTERCPLDHWT*
Ga0153699_13138	F097318	GGA	MNTLEHYIEYKRLNATKVMNALQLNGIISDECIFPEDVRDSGQAVYWLEDHMGEVHK*