Scaffold Ga0153699_1297

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1297
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20361
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y
F058142	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_129713	F003807	N/A	MNNDNNIWLKTEEEKLRSLIADEAKMMPMLDAIQATIKQLKAKQAFRLALLNQLLEDAINKE*
Ga0153699_129715	F058142	AGGAG	MAEVTYSVLNEPYVKQSQIIAVTRRDIPKAWNIPIFEDFPSDSEVVRYGIYVSDVHMVSRNPHQLAIQYCGAIYHAYDEFNITYISYQDDPYNTAVNAIIGNLVTAVKDDGVQLMDGYFERDFEQIRTYGPTQAEKHTWTFRMLRMEFNT*
Ga0153699_129716	F002260	AGGA	MSVPYQRISNATVEDIMFYDPAAERRASALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYNNLPNGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF*
Ga0153699_129717	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKATPGNTYYATSADGFDRVLQLGAMEVIAGGATPTTNTEGFTSNSILDCIRLVKQNFKVARMPGTPVIVMDSNGNANYFSGTPAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMIMFTTFLQDATRTVAGVPSCPVLVGAYFGDSALFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQA*
Ga0153699_129718	F028717	AGGA	MDNQNFVGNDVAPVTAQDSMSEAGEQNVNPGAIRKSTTQSLLSALSNASGTQFQSVEDALAYMARVGAQNNNGGNAQPGGQPKAQQSSNGRVTTNDLHEQFSKLQNDLAVKEQRLREKELDSDIQRAMGDKFDSDLLDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGNPLTISGLVNEVAQGNPKLLRQSNTNSGSGLRPGQGSFTGALEESIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSATVSSSSRKVL*
Ga0153699_129719	F026558	AGGA	MKTKAELLKRNPIYSSIYNEMLAYQYAYLGGLPFKMFVRKKRPSEDSTLYQDLVANTIAQPICRYIVDTINDVLFEPGIKRNMQFCTPTGARLDPNSTEWADLMLLDADLTNRSMNGFMESIGDLTSIYGHCWVAVDMPQKGQGDLGRPYVCAINPLNVWDWEFDYYGGRPMLKCVTVMEMEEEDCYYIKCYHLGDAVTPSYWESYEVEKGPAKLEEPAKLIGTGSYPPGMSLPIFIAYGRRDPRTIDLGISDIDAASDAMREFYKLECEKYTALQFAHTIIRADKGVSIPVHAGAIVRANEGQVEAIPIDTGDVDAIIRAQQDILEQIEALTGLGGLRNSKNQIASGIAIIEERKQLHRLAKSKARLMEVTEEMIYTFAARFMNVRWAGEVAYNTDYEAHDTNYRMAIIKSAKDLVGDNPMVQALITKEIIAMLAPDTAIPEYEDAYIQTIADPDLRNLMTEQNNEVLSRDLGPSMIPEHEMYGENGENENGEESESEGSFGNDGNASLLGGVDTPVTNVGVTYYTQQVAPVMLQGMNTGR*