Scaffold Ga0153699

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1190 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011338 Open in IMG/M

Scaffold ID

Ga0153699_1190 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26931
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (89.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26931

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (89.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5955556

Long. (^o)

126.817072

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004110	Metagenome	452	Y
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_119014	F041090	GAG	MKSNITNRSQGNIVKLSVIRSERRLALSPYGPVRAGLTTSQRTDRDQALTELLSSLENVVADLNSKSYTALDTLAIAIQGVRVALSVTTTEEAGTK*
Ga0153699_119015	F090097	AGTAGG	VSGKQAIHYRNYRRARDRALVRLSQAYPETYKKLLELEKVNDETTGAKWFDIDGSNSLIVGVSAGGGEQEPAPETNNYFTEGESDDK*
Ga0153699_119017	F040536	GAGG	MDKLGKVIAFHPVKSGLKLFYEVIEPDGETRWGGERVFDAVSWLHLAPRGSRLLVSGWESDDLDALPVGQPLDVTELYQTLKGDSQ*
Ga0153699_119018	F055552	GGAG	MNLEYWEKKAELCRKIGVEQLIEGDTKNGTRNLLRMVRAMEEINLIKAVEEDRPAEDIWASLITNGLLLTGEDKSNG*
Ga0153699_119022	F093237	GGAG	MPYKYDLYDTANMSNQEMLNALMAREIAPRVIVGTGYKNGRQVAIDYLKEQIAKESEGE*
Ga0153699_11909	F004110	GGA	VTELHPIVYDLAPSVAYTLHRRYKAYVEREDLVQECMAWAISREEWIAELMSVPDVEDIKHNEKRIAWQMRRVAERYARKEKASKSGYQINDEVYYETFTLGQLLPFVIASVIDGTVIEQVQEMIRDGQPRGSSSPAEGGGLLASLIDIKKAFLKLEQEDQVLLRMRHHENATLQQVAQYLECATSTADRRCTASLRRLQEILGGESPWR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153699_1190

Overview

Ecosystem & Geography

Associated Families

Sequences