Scaffold Ga0153699_1183

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1183
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27482
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008689	Metagenome	329	Y
F013760	Metagenome / Metatranscriptome	268	Y
F028165	Metagenome / Metatranscriptome	192	N
F053298	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_118326	F053298	GGAG	MQRCNDCAGSVDDQDSICMACRMAEWQDQQEQARQVRERHYALEAHRAAYLSRNRAIRDSIRAGVICGVSVLLLLTMIAAAKDALRYELETKPAILKAQGVR*
Ga0153699_118336	F028165	GAGG	MALAFSLEEKKERIRQAMEIFSETGSWSNADSIVRRQSVEKWIRNPELHAYATSLGYQQLCTAPIATFAPETKHPQCRMSFSGAMVHLKEGRYLCRDGARLHYAISHGQLVMYKLDGAGTRHHAGPAYFRGADIMAADWVIVK*
Ga0153699_118339	F008689	GGAG	MRFGEVIQALMAGGGNAVWRGEWGGATFLRYSELWNMFELHGPGGRVTQLEELSLSPGDLFATDWAVVKLDPRTGEVAK*
Ga0153699_118340	F013760	GGAGG	MILFVLGVLLGAGCLAVYNEMYTRWLYNDVRKMARKQGISEQQMRDALVWETAKEIDTNLGK*