Scaffold Ga0153699

Basic Information
Taxon OID	3300011338 Open in IMG/M
Scaffold ID	Ga0153699_1109 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011338 Open in IMG/M

Scaffold ID

Ga0153699_1109 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	34140
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (14.58%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

34140

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (14.58%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Seoul, South Korea
Coordinates	Lat. (^o)	37.5955556	Long. (^o)	126.817072	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seoul, South Korea

Coordinates

Lat. (^o)

37.5955556

Long. (^o)

126.817072

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_110932	F005050	N/A	LLDHNLVNCNDYKLGGVSAILVGACGTELVDPSDAVEVQALIDAGTAKIIEDIRFALPAGSPVTVDSPIGCGTSIRINEDRTATLYDANVTDENNTFWNDVNNRRIAWILAYACDSGKVIYINPPVGITTSANFIIPEQNNELQRYEVTFSWRDKEIPSQYAAPAGIFG*
Ga0153699_110936	F008936	N/A	MASFDELVKQKIKLFEQTPERLATAAVKTQAEAWRTIRPLLDEMDVDANGNIEQTENNIRRIGTIADQLRIVLGGDDYRQAVKAFLDSIDKGVVLTNEIAQTFESAFEPTEAQKQLLRISKQNAINAFYGSGLDQRFTQPFLEQLTTNIAARAPLREAVVALEGIVIGTEANDGRLLANIKTTATTAQAVADRSYSAAINQELGVEWFEYLGGEIDTTRPFCANRENGIYHRLEIEAWGDGKNSGGLNDIRDGTWAGRIDGTDSKSIFTFVGGWNCRHYLIPIPDRKVPESVKARARAEGFID*
Ga0153699_110940	F024730	N/A	MCIESLLGLRDCNQTEPSTGLYIDDLGINTTFLGQLITDQYLQGSELFTAKRAFAWRKLSSDVLTRLAPVMKADTVIEGKRVGQLVSNYSNVQTAAGAGRYTGIRLKIDPQSLSFLNFYLADINLAVDAANVNVPILIFDMSTLKLIETFTYATGGLDQFLGKTFASARRKLDIAIVYESTFDSAKMVTKKGHCFDCGGGVREAHICPFVDAIGIDLTTNGTDVLSSITSKYTAGMSINYNVNCDRQGWLCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVSVNKGFKPDAIEGIVAARDIAATRYNEELGAMLQNMRMPDDSHCWDCRRNMKYVTALP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153699_1109

Overview

Ecosystem & Geography

Associated Families

Sequences