Scaffold Ga0153699_1095

Overview

Basic Information

• Taxon OID: 3300011338
• Scaffold ID: Ga0153699_1095
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Haengju
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35036
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (87.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Seoul, South Korea
• Coordinates
  • Lat. (^o): 37.5955556
  • Long. (^o): 126.817072

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018705	Metagenome / Metatranscriptome	233	Y
F040085	Metagenome	162	Y
F055675	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153699_109538	F055675	N/A	MEPGEIDPVKYGVLWERVQNMDKKIDKMESQISELLELANRSKGGFWVGMTIASSVGAFVAWVAGHLKA*
Ga0153699_109544	F040085	GGGGG	MNLPDHPAIKAAYEMAVVAFLNACPTAEEDEAEAFIDAMAQLIFTTMRTYVEEEQHDCTDNH*
Ga0153699_109552	F018705	N/A	MDNKRIPFLVRLHKDSRELLAKASEDQRRSISSIIDQCVRDQLQTRYGELQPRLQRFLSGVKQ*