Scaffold Ga0153702_1757

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1757
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10192
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F009603	Metagenome / Metatranscriptome	315	N
F028809	Metagenome	190	N
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_17571	F031459	N/A	MQTDTNSSSGVGISLATAAAAGAVSLIPQLTQWFQLGAAVLAFIAAAIGLYKAVKK*
Ga0153702_175710	F009603	GAG	LTLLQALTAKLTVSANTLESGQLVRSTSSSDVSVEFAEPGKGSASAGEMLEMWESLLSDYDFAVTLLAGDGISSPSDLQIYNKMLGSVLVATTRYYGDFTQFRREAITRMS*
Ga0153702_175712	F028809	N/A	MLNCQKPAGLEALRQNRIALKAIERQTGFEFLGISNDEPSRIDGFIYDPAKGILVGSYEVKTRDYGLTKLQTTYGNRWLISWSKLQAALEISKHTKLPFFGILHLHSDDSVLMVEIFNSNASWAANHQATDKTVNGRTERVALIDMTGAARYQIKSGQIAEELF*
Ga0153702_17577	F005633	N/A	MRLATTVAVDKTGKSKLVSGPEVSADLQRNSFNTATIPEGGKLLLFMQGSLAPKVRKG*