Scaffold Ga0153702_1750

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1750
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10272
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F014504	Metagenome / Metatranscriptome	262	N
F034928	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_175014	F014504	N/A	MHDQARDAAEYDEASYMPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFMAEHGYSRSKTLWAVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNGTHAASH*
Ga0153702_175015	F006936	N/A	MEPNEITALTLPVIEQEIRAAYTEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDADKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFTDLFTRKPVDQWRADERESLRVSLKPIVDIYNKLI*
Ga0153702_17508	F034928	GGA	MNKQEWRGYPLRCWPNHQDDCYRWDWEVQIDGKWLEVVTQATRWIEEEAEETLQRYLERKKT*