Scaffold Ga0153702_1630

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1630
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11476
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F083690	Metagenome / Metatranscriptome	112	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_16302	F044903	N/A	MARRKKRSAPSRRRKSRKMGAIGKSFLMDALGLVAGAAAARVLTSSGKILPNIDSKIKSAGVIAIGAYFPKLLKGSIGQSIGSGMVAAGGLGLLQSTGVLGAIDNAMEIPVSVMAGDDLSVIAGYSEDNLSVIAGMDEEYSY*
Ga0153702_163020	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLETTALNILSAQLRKNNIEDLSDEDISYLIRQSYNIADEFCAYIETKGEKESSIII*
Ga0153702_16306	F083690	N/A	MPEITADKIIGKTLFAKKDLNRLNSALVKIGTIVAGSPVGQVYSYIQRNGKVYWQFIDFNNKPYFVLHTADSFKFSVDVKQAVEQQKKEVEKVEKQEKGSIPFYIEKYGKWILIYGVGAYLVATYIKSRK*
Ga0153702_16308	F060719	N/A	MTPQHLKINIQDEISADQLKLKYNKQASDRARYEAENSVSKSTGQTFQKYYVETKVFYTTANIGSQCNEITFINGGTTALVIADVPLQPNQSLRISGNRGEIDTTQYNLAFATPVNTGNLLIVIRKLYI*