Scaffold Ga0153702_1606

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1606
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11713
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F047675	Metagenome	149	Y
F061848	Metagenome	131	N
F063688	Metagenome	129	N
F067738	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_160612	F067738	N/A	MEVLTAAIIAGGFTVIVALINRADKTSQKDHAETYKALGRIEQKIDGHVTNHEKR*
Ga0153702_160614	F061848	N/A	MAGVAFAYDAYNAPNALPVTPPVTVSLAPRAPLTTTTAAPLTDCQYALQLAQKAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPTGWLQAQGILQTCNDLFDPVINTNSALAIWHNSGYGPWALPNP*
Ga0153702_160615	F019829	N/A	MTEQPIPDPGLTESTRHMYTEKYRETFNSFVDEVFRPNFIPAPKPVDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAVIIGI*
Ga0153702_160618	F063688	GAGG	MTRYNSNYGSHDQLQDLRKLNMELHHELDAIKRLLDETTKALHQSQDELLLAIEALVRARDGKP*
Ga0153702_16064	F047675	AGG	MKYEIVSPRIGTPGDIYEPVDGVNVDALVAGGFIIQSPTKAPKGAKTKTDTNEE*