Scaffold Ga0153702_1599

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1599
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11794
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F046909	Metagenome / Metatranscriptome	150	Y
F088497	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_159914	F009140	AGGA	MRLNLTHRALLKRLSGGPRTMHDMTHSYTDNNSVSFHYQKYLPELERFGYVISHDEKWHLTEYGRMEMNRAISGAAMRIENGSVREPYDGKELRRNVFRQGCYDFLKYPSRFGDNLIYHKGAQA*
Ga0153702_159916	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPVSEEEFEDKMNRYELDQQYAEYIMDRRTVGNGEMLIRIMERGELYEDFKEHIMWGGK*
Ga0153702_159921	F034503	AGGA	MNKDEAHHLLNKRKQGLAVPLYIVNRALVVSGDISMACSPCQATWMESTGMAQGEGIRDLFYPFVDRDNPRLNPTNEGAQ*
Ga0153702_159924	F002707	GAGG	MTQSQALTKALVLAIIAPDDDKAAQASTLAMQIAQGLTKTQVDRCKAQALKMIGENP*
Ga0153702_159925	F088497	AGGTGG	MNETKQLVWAELWAAMDANPNQWIETTEEMYWEMLEAVPPRSQRKGAFLVGEANHDNAEGYPVYSAFKRVGDNFYAKHMTYSEFNNEFAYIPVRELR*
Ga0153702_15994	F046909	GAGG	MRPPNKDFCLHMAQITFPHNKPLSWTWLFAWGFHEMYVDGWYEDWKP*
Ga0153702_15995	F002764	AGGAG	MKEPEDEAFEDLAKRQGDWGLQGSRKHQIMRYAETNARNEVIEEIAQHIEKCTLAFGKDTIQSFTVYIRGMKR*
Ga0153702_15996	F011742	AGGAG	MQTIEFVPFEWVDDDFNPDIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEINRNDQEIADERT*
Ga0153702_15997	F020138	AGG	MNQQQINRLNAFWQDVEAHKALNPSSPETALVILKSVALDALLAAQDIEQIGVNDANN*