Scaffold Ga0153702_1582

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1582
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12158
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F049620	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_15821	F002778	N/A	MKEWNSKMLEISAFCEEVNAWITTAPSAEDLDSCDEYLRQLSGYYSRYTVISGLNESIYAQMMMSCIRDMPEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVQKLLLVTSDNYRTLLSSFRQERILVGHMAT*
Ga0153702_15826	F049620	N/A	MTPQERDEKIVGILTKICINVLVKNLFDKNGERVYEEFLYELNQLEVNENDYTRCNSSHAFLHKTAIEYLKKTIVFNEEHRK*
Ga0153702_15828	F003786	N/A	MNLAKYQPHNQDEKSIIEARPNRIANIEPKDAFRNVLNVISSIFPVYGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLVYRRKIIAAHDNEVAALRHNANMEEKARKAREELYANFPTMLKEFKGKDYTTVPLYWYDMCIQFGMIDYEEGEKRALWEEAKEIALKEPPESMDLMTIRSHAKKIEQGNTKRAAVIAQQLAVWRKVLKK*