Scaffold Ga0153702_1569

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1569
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12311
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F018136	Metagenome / Metatranscriptome	236	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N
F048162	Metagenome / Metatranscriptome	148	N
F080052	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_15691	F018136	N/A	TFVLALQQAMHGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHSALFAS*
Ga0153702_156913	F034182	N/A	MESHTFHSLVGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAVSLYKMTRTKKP*
Ga0153702_156915	F011668	N/A	MSAKTIALWMIILSFAFLGMAFLTSCAGFNNPALCVKTDYGTFCYTPEFSKTLHDK*
Ga0153702_156917	F048162	N/A	LKKKRQPTVESERTEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLAGDSFSILFPDLEEEEEDEEA*
Ga0153702_156918	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKLDEDTMEAVRAWIWEERGKRNIPELV*
Ga0153702_15692	F044972	N/A	LTILAFYMPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVINGGVAYELANVLTLANDTTSYGVSGGAVIVDSVSEKTGAGTFKTITVSATQYPEIV*
Ga0153702_156922	F080052	N/A	MEPLTFLAIFATCMICSFIGGYLIGSIKATCEAEQTRRWWMNRQTRRERR*
Ga0153702_15693	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKEGDELEIKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0153702_15694	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMKHHHETTDMSEAMGVAFDLYNASSPASDASEGSGSGN*
Ga0153702_15695	F035667	N/A	LTGWGFVHILEELPFAAGLQLLQADDYTNGIHRPWSRNNASVDIDALATIEDTLAKYGKIQVRESEI*
Ga0153702_15696	F023103	GAG	MKDYAEIREVTIPDAVMLNARLLCVELARRTQPFGNDETAGTTRVKKDIGKIIKPPVQLLAMANKVENKKIGQRLKTLISNQRYDVVETIFRNLGFLNKWTGIEFLDGKSAIKEHHQAARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKTVRGGSGSVQDSTSNIKSPKVTLTNNVPWVSQILPASEQLHALSVVSTKMKNQMNMILKKRQKTLLET*