Scaffold Ga0153702_1562

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1562
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12406
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013412	Metagenome / Metatranscriptome	271	N
F039136	Metagenome	164	N
F058715	Metagenome	134	N
F059002	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_156221	F039136	N/A	MTIEIKYTASVYTPAGWRGVTITAKATKTSEKMALVVEVLEINGKSPKSDMSRTGASRQRFNGSSISCREVGAKKRLSACEILN*
Ga0153702_156224	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLSNGKPYAQRVQFRSFDPDDMDAVLLLTEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGYES*
Ga0153702_15626	F059002	N/A	MNIYNEIKSGISRLFGVHQTVEIKKTPRTLKSKRINKRGRGRPKGLRIPREIVDAVLQAEKSLTIRQLAAKYRVSCFWVWSVRAKKLRLKR*
Ga0153702_15627	F058715	GAG	MSLLEKLGLTKQSMEKMLGVVAVAKKTKIKRYRRYETVPADIREAILGENPSYTCRELAKKYGVSASTIYDIRESKSKIE*