Scaffold Ga0153702_1517

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1517
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13107
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F014714	Metagenome / Metatranscriptome	260	N
F024719	Metagenome / Metatranscriptome	204	Y
F026822	Metagenome	196	Y
F027493	Metagenome / Metatranscriptome	194	N
F065721	Metagenome / Metatranscriptome	127	Y
F067515	Metagenome	125	Y
F082173	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_151711	F065721	N/A	VREREKMTKYIANENGDWWEVVEGEGLYLIDTEWENIASKMEEENSTPNDDKFERFIWRYGTEVNLNLTNVEGVRV*
Ga0153702_151714	F082173	AGGA	MAKQFKTTTLLADDSGLVWVEAQLSEAQVNRLIKGYKRAGVSLTAYGSPNQVLAQVREISEALSA*
Ga0153702_151715	F067515	N/A	MKYTITNDTLKSRAQDIKQEFENGGASWEGVALEIARLELTLEAIKKDGLEALVGIDLGTWDGHYCASEEDITLFAPKCCEHDYESACACCMAECDNCLEA*
Ga0153702_151720	F027493	AGGAG	VNQDNNLNRPVRLSDYFVIISGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0153702_15173	F014714	GGCGG	LELKEPELFDYLKEFYYSDLEKSEEFDNWDCISLEAKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLTEIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF*
Ga0153702_15176	F024719	GAGG	MSEVIQLPRRGKITVVFYEVSDPQGIAIWGGESPREALDWYRRSPAGSKIWVSQYEADEEDAKLVLDLIEITPIVLATITDSIDRWSR*
Ga0153702_15177	F026822	N/A	MVYVKLLPIGLRGLMSEPRYLMGDDYALNGVEEDIVKCKECSTEFDYTYYRSHICSDCEDLIIKRERGRV*
Ga0153702_15178	F006842	GGAG	MKATPAICGDHLVPISECDCLSYMREITRSAEKLIQLTQEREELSK*
Ga0153702_15179	F006618	AGAAGG	VSKIKQHLEKQVVITGSRKESTGWKRYICFEYEGNQYELTLFWEEFNGYDTYWRSPDKTPDWVVNWNEEEHEGMSFEWYLDELSWEMNK*