Scaffold Ga0153702_1488

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1488
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13458
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010530	Metagenome / Metatranscriptome	302	Y
F019829	Metagenome	227	Y
F047675	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_148813	F010530	GGA	MTDYAMVLTANYAGTQWTLNGDYDTLVWLSDGTPPTQAELDAQWPTVAYNSQVVIVETNRRTQYEAQSDGLFFEWQRGTNTQAAWETAVQAVKDANPYPPNPAG*
Ga0153702_148817	F019829	N/A	MTEYPIPDPGLTESTRQMYTEKYRETFNNFIDEICRPNHVPPVKDIDHSILLDELAILREKYLNGTPSDEHKFAGAVITAAMAVIIGI*
Ga0153702_14886	F047675	AGG	MKYTIISPRIGTPGDEYVPLDGVNVDALVAGGFIEQSTVKALKGAKTKTDTNEE*