Scaffold Ga0153702

Basic Information
Taxon OID	3300011337 Open in IMG/M
Scaffold ID	Ga0153702_1484 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011337 Open in IMG/M

Scaffold ID

Ga0153702_1484 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13518
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (70.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13518

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (70.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Paju, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6518694	Long. (^o)	126.72164723	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Paju, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6518694

Long. (^o)

126.72164723

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F018366	Metagenome	235	N
F021759	Metagenome	217	N
F028739	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_14841	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSIDHVLHIPVGMVKAIKVLMDLQIKI*
Ga0153702_148415	F011391	N/A	MAKFQVVEGFTVLGKQYPSTIDGADVDHLDSLLQSGRIVPVADKSTSNADTAGEK*
Ga0153702_148418	F028739	N/A	MILQDLKDRHKGGQVWVCGSGPSMGWVTPQFFEGKTVVAINEVGFVFGLEDFYTATNYSTHHPVVAGNVAANPHRIFVTPDMNLEAGDMTATHVGSGNHITFRPHAPFWRPDTDWPTDPDVLITGGTSAHIAMHLACYMGASQINLVGVDLGLVDGQENFAGYRKSNGAMDGWRQQFGVVVNKLRELYGVRFFRLQPSLELLVVE*
Ga0153702_148419	F018366	AGG	VVPSPVAIISPFEQNYWDRFGANFVASIEALTVKPQEVILVTTARVDVPDWWKVVPYWDDRIWPCVNVGVREATAEWCTHLPVDDLMDANFFEGLILEGDAVNVRGRWNGGLCYGTPDQYHNLLNMRNNGMPGLAVIRRKTWLKIPYRSHKYVDWVHWCEMRSHNVVASFDSRCVWTWVRHDDALTAQSDHQAEQDVINFCGLLKSGRVVPGEDWPPKLAE*
Ga0153702_14842	F021759	AGAAG	MDAGYATVLAAAIATFGGIIVAIMQLKEVRDENRADHAVVQKRLDNLIDMVGKQGAKLTSHLDWHLTKEPSGSLTKTKQVATRKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153702_1484

Overview

Ecosystem & Geography

Associated Families

Sequences