Scaffold Ga0153702_1443

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1443
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14133
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011227	Metagenome / Metatranscriptome	293	Y
F034850	Metagenome	173	Y
F041184	Metagenome / Metatranscriptome	160	N
F047481	Metagenome / Metatranscriptome	149	Y
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_144310	F093533	N/A	MYYDRIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKSIKDWEIYITQKSFMQNISPFRIEKPFPFLIKSQQNESESESESADINCQSVNPSGGLEQTVGRRQSQVL*
Ga0153702_144314	F034850	N/A	MEEDLVLGESDEVEYVEEELGYGYPQYISSSVEVLTMLETANPMTKEEVQRVEELKKLCFEMLEFSVKSMHTMLFINDIAD*
Ga0153702_144319	F047481	GAG	MDSKSIGMCTATILIKVWADIALSEVGVVVAIIAGISTIVYNVVRLYKELKA*
Ga0153702_144320	F011227	N/A	MTLTDLKASAYDCLAQIEYLQKQLQEINQKIAEELQKEKNENG*
Ga0153702_144324	F041184	N/A	MASDFRPGKLDIQMWRNDTWQQVFTLLADTTPINLTGATVYIQVRKGCGGVLALSLTNGSGVTIGGVSNNQITVNKLVDIAKGNYVWDMQVTFTTGVVKTYLEGDFIVYDDVTKP*