Scaffold Ga0153702_1425

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1425
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14449
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002766	Metagenome / Metatranscriptome	531	Y
F018704	Metagenome / Metatranscriptome	233	Y
F075694	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_142510	F075694	GGA	MAGRGMGAATRGGGAVESGPKNKMISETSTSTGVPMMAKGGMANKGNINEHKRMAMGKPVGKMGGGMMSKGYAAGGMMSKGYAAGGAAKKMSKGMMSGGKRAK*
Ga0153702_142514	F018704	AGGAG	MSNSNIQAVTKTADGHAVGGRTRVAGIYFTNSATAASFTLKNGSTTAGTALLTINTPAAAGATDLILPDMGIVFDSGVFIDVSGADVTSVTLFFYGGAAQ*
Ga0153702_142521	F002766	GGA	MLEFAESVIKELRKLREDSEAIILNGTINDMERYRFMMGRLEGLKLAEQAVRDLLSRRTTDDF*