Scaffold Ga0153702_1379

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1379
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15612
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009265	Metagenome / Metatranscriptome	320	Y
F009679	Metagenome / Metatranscriptome	314	Y
F009746	Metagenome / Metatranscriptome	313	N
F036209	Metagenome / Metatranscriptome	170	Y
F038217	Metagenome	166	Y
F040620	Metagenome	161	N
F044983	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_137917	F036209	GAGG	MADKVTVKMTPDSRDLRGLYKAFREMDEGAKKALKDDVTSISQWSATEMQSSYNLNPLPAQAQKVAATIRANKDRIPNVTIGGSKGRFSGGAVSGQVLFGSEFGGPAPFENGGRRFPERSRPQGRGNEGYGIFLTLKRIQPELTRRWKDAVSRRVIEKWDDNNG*
Ga0153702_137918	F009265	AGG	MQYTVTTKQGNNYIVSDESAWLWIEIERELGYTVSQAAEKMSQGSLDVITCMLYKAAKAQGHTKLPSQQAWVTNEFETFEVVEDSPKEN*
Ga0153702_13792	F040620	N/A	MTKWVQVKHDELLEYVAMVEHLRKDHTALQEQIKDAKELASIIEATYKERLDRLTDFILDIHPANYKYERGLMDAYNIVSGHE*
Ga0153702_137920	F009746	AGG	LANLATYRANLASTLAAAGRVVYAWPNENITPPAIVLVPGSPYITVSAIGGARCNVRFDITCIVNAADNQAALANLETLILSVTDLLATNISFLGGWSQPTVTQIGNADMLISQLNIEMVTTN*
Ga0153702_137921	F009679	AGGAG	MSLIVLSELKAVLGIGDIYADAIVQECADAAENILLSYLVFDDVSIVGVSLTNNTARFFCHNNTFVVGQALTVTNCGSPFNGSRTVTKVGYDEYGVSYFEAAVTNADISKRQVIPNGRAVLTSQATLYDSGYPEVKEAAMAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG*
Ga0153702_137925	F038217	AGG	MTQNKPEPPEDKPMGIYLSLNSALSVANWLAPTDVAAITLARRIATALDTAFDMGDLKEATPLAAKYLSVLQQLHLTVETRTAGKQGEENDGTNHVGNYLRLLETKDRKPKPKPAQRRASGGATS*
Ga0153702_13794	F044983	GGA	MSDEVWASIERKIKGHYLAAQTLPRACPQCARILEPVDFGVDPESNERLWVTHCCGNWEKFYEKLGPSDLI*