NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153702_1361

Scaffold Ga0153702_1361


Overview

Basic Information
Taxon OID3300011337 Open in IMG/M
Scaffold IDGa0153702_1361 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16132
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NamePaju, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.6518694Long. (o)126.72164723Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F009888Metagenome / Metatranscriptome311N
F012219Metagenome / Metatranscriptome282Y
F013760Metagenome / Metatranscriptome268Y
F028165Metagenome / Metatranscriptome192N

Sequences

Protein IDFamilyRBSSequence
Ga0153702_136120F013760GGAMILFALGVLLGAGCLAVYNEMYTRWLYNDVRKMARKQGISEQQMRDALVWETAKEIDTNLGK*
Ga0153702_136124F028165AGGAGMALAFSLEEKKERIRQAMEIFSETGNWSNADSIVRRQSVEKWIRNPELHAYATSLGYQQLCTAPIAAFAPETKHPQCRMSFSGAMVHLKEGRYLCRDGARLHYAISHGQLVMYKLDGAGNRHHAGPAYFRGADIMAADWVIVK*
Ga0153702_13613F009888GAGGMAIIFELTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNIATGAAYSFVSGSVTLTKQYSAQGILSILNPAAYPTAANIRVTISFTVGSDVRRFGPLEIEVLAP*
Ga0153702_13615F012219AGGTGGMNLQNFRIEKEPAPSTDWRVFGDIEDDNGNILGTFGQDGTSVNVWWVTQDEQFQYGIVSQFAVIMAQQIVAGTAE*
Ga0153702_13616F001733GGAGGMGSISISRLLVVVLIAFVASFSTVFGDGVRTAEAHDISELGAVMALYGSKAVAAGVSAAMSAALSFLTMPFKGVQANSLKVGK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.