Scaffold Ga0153702_1326

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1326
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16927
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (53.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043778	Metagenome	155	Y
F055668	Metagenome / Metatranscriptome	138	Y
F079959	Metagenome	115	N
F098655	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_13261	F079959	N/A	SSRMSGQYKEKNCPKCGVKHRKRGLHCSASCAAMGRPVSEETKELHRQNTREYLQTPEGIANSKKTGDGTQIAADEFAVDIPDIMDLRDYDSLDGYDRAENW*
Ga0153702_132610	F043778	GGAG	MSPIEIVLVAILIGKNNFTGEIELQYQSVDRYKSMSTCNKDRQSLLKKDKGITYLCLKVDPV*
Ga0153702_13262	F055668	AGAAGG	MTTPTLEEINDLCRAIAEETLDADTTELEELELQKQYEFMQYADEAADLDAEFYGVA*
Ga0153702_13268	F098655	AGGA	MNSVYIVRSGLYDGNIGLTKWMNVRVFTSYAVAEAWVESEKLRDKSFNENFDSYEIEEMTVYE*