Scaffold Ga0153702_1306

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153702_1306

Scaffold Ga0153702_1306

Overview

Basic Information
Taxon OID	3300011337 Open in IMG/M
Scaffold ID	Ga0153702_1306 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	17524
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (24.44%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Paju, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6518694	Long. (^o)	126.72164723	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019126	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_130617	F019126	GAG	MINSKNSIFVQTKSNQMSQKVTRTYSDLLDLIRGVNSTPAEKGSKKEVKLKKIAEKIKPIFEEYNDKREDIRLDNAHADSNGVLDLNEKGEYKFTKDGLKSMSKGMKELLSESFDFYQFSFSTEGIEDLLFLEGWVEGIVKPIEEDGGEI*

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